Lab Members

Yifan_Cheng

Yifan Cheng, Ph.D.

Professor, Biochemistry and Biophysics

Yifan is a biophysicist and structural biologist. He was born and grew up in China, entered college in 1978 after the ending of the “culture revolution”. As an undergraduate, he studied solid state physics at Wuhan University. In 1991, he received his Ph.D. degree in physics from Institute of Physics, Chinese Academy of Sciences. He continued his research in solid state physics and electron microscopy for five years as a postdoctoral fellow at the University of Oslo and Max-Planck-Institute of Metal Research. In 1996, he changed his research direction to structural biology, and received further training in cryo-electron microscopy (cryo-EM) from Professors Kenneth Taylor at Florida State University and Yoshinori Fujiyoshi at Kyoto University. In 1999, he joined the lab of Thomas Walz to setup a cryo-EM operation at Harvard Medical School. He joined the faculty of UCSF in 2006. Pioneering works of his lab in cryo-EM methodology and membrane protein structural biology facilitated the “resolution revolution” of single particle cryo-EM. He has been an HHMI Investigator since 2015. He is also the recipient of the Christian B. Anfinsen Award from The Protein Society (2018). He was elected to the American Academy of Arts and Science in 2019 and the National Academy of Sciences in 2020.

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Students

Adamo Mancino

Adamo Mancino

Graduate Student, Biophysics

Adamo completed his undergraduate studies in Neuroscience at McGill University in 2016. It was there that he grew fascinated by the concept of cellular excitability, and resolved to study the molecular mechanisms by which cells fire in response to cues in their environment. Accordingly, Adamo earned his master’s degree in Neuroscience at McGill University in 2019, where his thesis work focused on characterizing voltage-gated sodium channel behaviour by electrophysiology. In his next steps, still motivated to answer questions of structure-function basis, Adamo wanted to build on his functional skillset and sought out training in structural biology.

Adamo is a joint PhD student in the labs of Dr. Yifan Cheng and Dr. David Julius. Adamo seeks to use single-particle cryo-EM to understand the structural mechanisms by which ion channels in the somatosensory system respond to a variety of stimuli in the outside world.

Supported by NSERC's Postgraduate Scholarship - Doctoral fellowship

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Marcell is interested in revealing how antibodies can modulate the activities of viral proteins by solving structures of protein complexes by cryo-EM. Currently he is exploring how SARS-CoV-2 Spike-binding antibodies influence the formation of giant multinucleated cells called syncytia. Additionally, he is using antibodies to investigate how a herpesvirus protease transitions between active and inactive states.

Marcell graduated from UC Berkeley in 2014, studied molecular and cell biology with a neurobiology emphasis, and worked with Kristin Scott to study the neural correlates of taste in drosophila. Post-graduation, he joined the Hematology group at Bayer and designed chimeric antibody drugs to treat non-malignant bleeding disorders. He then joined Charly Craik's lab at UCSF as a technician and used phage display to isolate antibodies to facilitate structural and functional studies of soluble and membrane proteins. Furthermore, he established a lasting collaboration with Corie Ralston and Sayan Gupta at the Advanced Light Source to perform X-ray footprinting (XF-MS) to characterize macromolecular dynamics.

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Marcell Zimanyi

Marcell Zimanyi 

Graduate Student, Chemistry and Chemical Biology

Maxine Bi

Maxine Bi

Graduate Student, Biophysics

Maxine earned her bachelor’s degree in Health Sciences with a minor in Biology from Purdue University in 2019. During her junior year of undergrad, she was introduced to research and discovered her passion for macromolecular machines and structural biology under the mentorship of Nicholas Noinaj. Using X-ray crystallography she structurally characterized the β-barrel assembly machinery (BAM) component in Pseudomonas aeruginosa. To further pursue her interest in structural biology she joined the Biophysics graduate program at UCSF.  

In the Cheng lab, Maxine is focusing on developing methods to improve current obstacles in cryo-EM. Currently, she is working with the Agard lab on developing affinity grids to overcome the preferred orientation issue with membrane proteins. She is also working on developing single-particle tomography methods to improve current limitations in solving flexible biological complexes.

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Estelle graduated from Western Washington University in 2021, where she earned degrees in Biochemistry and Art. While at Western, Estelle conducted research with Dr. P. Clint Spiegel, whose work informs the development of hemophilia A therapeutics with reduced immunogenicity. She structurally characterized a bioengineered factor VIII in complex with a pathogenic antibody inhibitor using X-ray crystallography.

Estelle is co-advised by Yifan Cheng and John Gross. She is interested in using cryo-EM to investigate how the HIV accessory protein Vif antagonizes APOBEC3 host restriction factors via hijack of the ubiquitin proteolysis pathway.

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Estelle Ronayne

Estelle Ronayne 

Graduate Student, Biophysics

 

Maxine Bi

Kevin Choi

Graduate Student, Chemistry and Chemical Biology

Kevin earned his B.S. at the University of Texas, Austin in 2020. He then trained as a fellow at the National Institutes of Health, studying the mechanisms of mitochondrial iron uptake. In 2022, Kevin joined as a graduate student in the Chemistry and Chemical Biology program at UCSF.

As a PhD student, Kevin is co-advised by Yifan Cheng and David Julius. He is interested in studying the roles and function of ion channels in nociception and chronic pain.

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Postdocs

Amber Smith

Amber Smith, Ph.D.

Postdoc, Biochemistry and Biophysics

Amber earned her Bachelor of Science degree from the University of California, Santa Cruz in 2008. After graduation she went on to pursue her Ph.D. from the University of Michigan, Ann Arbor. There her graduate mentor Janet L. Smith cultivated her passion for structural biology through the utilization of X-ray crystallography. She focused on the protein family of glutamine amidotransferases to understand how multi-domain protein complexes alter their structure to regulate the chemistry that occurs between distinct active sites.

Amber’s post-doctoral research focuses on the structural requirements that regulate protein-nucleic acid complexes in the context of viral replication and infection, specifically those comprised of host and viral components. Her current model system is that from HIV, comprised of the HIV viral protein Rev, which binds to the viral RNA transcript and recruits the host proteins Crm1 and Ran. This complex is critical for HIV replication and infection.

Supported by a National Institute of Health F32 Postdoctoral Fellowship 

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Un Seng earned his B.A. in Chemistry and Biology far above Cayuga’s waters at Cornell University (Ithaca, NY). He then went on to pursue his Ph.D. at sunny Caltech (Pasadena, CA), where he worked with Dr. Shu-ou Shan to study mechanisms underlying the targeting of nascent tail-anchored membrane proteins (TAs) to the endoplasmic reticulum. In collaboration with Dr. Shimon Weiss’s lab at UCLA, Un Seng demonstrated using single-molecule FRET experiments that the Get3 ATPase can act as a dynamic, fluctuating clamp while chaperoning TAs. Additional biochemical and biophysical experiments characterized the multiple functions of a lid motif on Get3 and an additional role of the Get2 membrane receptor in the targeting pathway.

As a postdoctoral fellow, Un Seng works between the Cheng lab and Geeta Narlikar’s lab at UCSF to study chromatin and chromatin remodelers.

Supported by a National Institute of Health F32 Postdoctoral Fellowship (NIGMS) (https://grantome.com/grant/NIH/F32-GM137463-01)

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Junrui Li

Un Seng Chio, Ph.D.

Postdoc, Biochemistry and Biophysics

 

William Arnold

 
William Arnold, Ph.D.

Postdoc, Biochemistry and Biophysics

William is a membrane protein biochemist/biophysicist. He received his B.S. in chemistry:biochemistry in 2013 from the University of Loyola Chicago, where he also minored in music. At Loyola, he conducted research in the Herlinger Lab where he worked on synthesizing lanthanide-selective chelators for remediation of spent nuclear fuel. He then went to the University of Illinois at Urbana-Champaign to receive his PhD in biochemistry (2018). He conducted research in Aditi Das’s Lab where he studied multi-ligand kinetics of cytochromes P450, particularly CYP2J2. There, he developed an interest in lipid interactions with membrane proteins.

At UCSF, William is a joint postdoc in the Cheng and Julius Labs. He is interested in using cryo-EM to study how lipids regulate the function of ion channels.

Supported by the National Institute of Health's IRACDA program 

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MJ earned his B.E. degree of Bioengineering at China Pharmaceutical University and then a PhD in biochemistry and cell biology in the lab Dr. Yao Cong at SIBCB (Shanghai Institute of Biochemistry and Cell Biology, University of Chinese Academy of Sciences). There, he used cryoEM, to determine the structures of chaperonin TRiC at various nucleotide states in different conformations from closed to open states, to reveal a thorough picture of conformational transitions during TRiC’s ATP consumption for protein folding. In addition, he had some collaborations, including GPCR, using cryoEM.

He is interested in the conformational change of protein complex during function, as well as using different methods to solve this problem.

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Cristina Puchades

Mingliang Jin, Ph.D.

Postdoc, Biochemistry and Biophysics

Minglian Jin

Hao Wu, Ph.D.

Postdoc, Biochemistry and Biophysics

Hao received his bachelor's degree in State Training Base of Life Science and Technology from Lanzhou University, after which he started his PhD in Prof. Ning Gao's lab at Tsinghua University. Hao has solved the structures of ISWI, RSC and ODA, central to both these projects was determining the function of large, ATPase-based complexes using single-particle cryo-EM.

Hao will collaborate with Geeta Narlikar's lab at UCSF to study chromatin remodelers, which utilize the energy of ATP hydrolysis to slide nucleosomes and play key roles in nucleic acid-related cellular processes. Hao will also try to use cryo-EM to determine the structures of some membrane proteins.

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After graduating from the Physics Department of Nankai University in 2012, Chengmin went to the Institute of Biophysics, Chinese Academy of Sciences, to pursue his Ph.D. There he received instruction from Dr. Ping Zhu and learned how to perform structural analysis of macromolecular complexes using cryo-EM techniques, including epigenetic regulation related complexes, 30-nm chromatin fibers, and Ebov nucleoprotein oligomers.

In the Cheng lab, Chengmin mainly focuses on how to leverage cutting-edge technologies, such as machine learning, to recover more structural information, improve the quality of cryo-EM images, and analyze flexible conformation changes of heterogeneity structures.

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Hao Wu

Chengmin Li, Ph.D.

Postdoc, Biochemistry and Biophysics

Minglian Jin

Wooyoung Choi, Ph.D.

Postdoc, Biochemistry and Biophysics

Wooyoung earned his B.S. and M.S. from Tsinghua University in China. There, he studied programed cell death pathways by using X-ray crystallography, biochemistry and cell biology. He then pursued his Ph.D. at the Van Andel Research institute, Grand Rapids. He focused on the understanding channel gating mechanisms by using Cryo-EM and electrophysiology. He elucidated a channel gating mechanism of calcium homeostasis modulator 2 and resolved transient receptor potential canonical 3 during his Ph.D.

During postdoctoral training, he wants to understand/reveal mysterious protein behaviors and elucidate molecular mechanisms using Cryo-EM and other biochemical/biophysical tools.

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Jinsung earned his B.S. Chemistry in 2014 from the Korea Advanced Institute of Science and Technology. In 2010, he joined Dr. Insuk So’s lab in Seoul National University at which he developed everlasting interest in twinkling behavior of ion channels. After getting his M.D. in 2018, he decided to do his Ph.D. in Physiology in So’s lab. For over a decade, Jinsung has explored intriguing sciences behind ion channels, especially TRP channels, as an electrophysiologist. After getting his Ph.D. in 2023, Jinsung has joined the Cheng lab to walk into the new scientific discipline: structural biology.

As a postdoctoral fellow, Jinsung works between the Cheng lab and Lily Jan’s lab at UCSF to study structure-function relationship of ion channels in endogenous environment using cryo-EM and gene-edited animals.

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Wooyoung Choi

Jinsung Kim, M.D., Ph.D.

Postdoc, Biochemistry and Biophysics

Minglian Jin

Jiahua He, Ph.D.

Postdoc, Biochemistry and Biophysics

Jiahua earned both his B.S. and Ph.D. from Huazhong University of Science and Technology. In 2018, he joined Dr. Sheng-You Huang's lab, where he focused on the development of AI-based methods to interpret cryo-EM data, aiming to enhance the accuracy and efficiency of cryo-EM workflows. Jiahua's research contributions include projects such as EMBuild and EMReady, where he addressed the challenges of automating model building on EM maps, and improving the quality and interpretability of cryo-EM maps.

With a passion for unraveling the mysteries of molecular structures and interactions, Jiahua is poised to make further breakthroughs in the realm of cryo-EM and structural biology with AI-based techniques during his postdoctoral training.

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Staff Scientists

Y. John Wang

YongQiang Wang, Ph.D.

Lab Manager, Biochemistry and Biophysics

YongQiang (Y. John) joined the Cheng Lab with the main role of lab manager in 2016. Rather than just performing well-defined lab duties, Y. John aspires to do everything he can to ensure that the lab runs smoothly, which covers the procurement of lab supplies, organizing inventories, instrument ordering and maintenance, preparing lab protein tools, organizing lab activities, and so on. As a way of cherishing and benefiting from Cheng Lab culture, which aligns around Yifan's central chrism of "Always being encouraging and open!", Y. John's lab management also aims to develop and cultivate a lab environment with the least tension to make everyone work comfortably in the lab and focus exclusively on the science, with the thinnest barriers to make for free and full communications lab-wide.

Prior to working in the Cheng Lab, Y. John wound through his bachelor's education in pharmacy (Xinjiang Medical University) and PhD research in phytochemistry (Shanghai Institute of Materia Medica, Chinese Academy of Sciences). He further anchored himself in the sciences over the course of his postdoctoral work in Professor M. Almira Correia's lab at UCSF, where he studied the roles of phosphorylation/ubiquitination on protein degradation using a family of cytochrome P450s as the model substrates to better understand the substrate selection/residues localization in ubiquitination. Altogether, his experiences have shaped his scientific interests in protein degradation and aggregation, post-translational modifications, non-canonical ubiquitination, etc. as well as any 'odd' observations encountered in daily work. 

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Shawn's interest is focused on advancing the computational methodologies for cryoEM and cryoET. Central to his effort is to explore new computer algorithms and develop the corresponding GPU accelerated software packages to improve both the accuracy and the efficiency of data processing in cryoEM and cryoET. As the author of UcsfTomo, MotionCor2, and more recent AreTomo, he is very glad that his effort paid off. These software packages have made, and some are still making a difference in helping not only advance the science but also free the scientists from repetitive time-consuming work, allowing them to embark on creative endeavors.

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Shawn Zheng

Shawn Zheng, Ph.D.

Staff Scientist, Biochemistry and Biophysics

Affiliated Members

Shengjie Feng

Shengjie Feng, Ph.D.

Postdoc, Physiology

Shengjie earned her Ph.D. in Neuroscience, at the Institute of Neuroscience, Chinese Academy of Sciences, where she used mouse models to understand the mechanisms and functions of membrane proteins, including TRP channels and glutamate transporters, during neural development and disease.

As a postdoctoral fellow at UCSF, Shengjie works between Lily Jan’s lab and Yifan Cheng’s lab using single particle cryo-EM to study the mechanism of TMEM16 proteins.

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Raghav earned his bachelors degree in Zoology from the University of Delhi, and his Masters degree in Life Sciences from Jawaharlal Nehru University in Delhi (India). He did his PhD with Dr. Adam Frost at the University of Utah, traveled with the lab during their move to UCSF and joined the lab of Dr. David Julius for his postdoctoral research. With the Cheng lab, Raghav studies the regulation of ion channels in pain pathways. His work has been supported by an American Heart Association postdoctoral fellowship.

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Raghav Kalia

Raghav Kalia, Ph.D.

Postdoc, Physiology

Y. John Wang

Li Wang, Ph.D.

Postdoc, Department of Pathology

Li earned her master’s degree and PhD in Cell Biology and Development at NENU and BNU in China, where her studies focused on the genetic stability and evolution of plant allohexaploidization as well as the development of rice.  After graduation she went to Tsinghua University, where she engaged in structural and functional studies of the mechanosensive Piezo ion channels since 2016. In her next steps, she remained motivated to use cryo-EM to investigate macromolecular complexes in biological processes.

Li is an affiliated postdoc in the labs of Dr. Yifan Cheng and Dr. Stephen Nishimura. Li seeks to use cryo-EM to understand the structural mechanisms of therapeutic target in cancer and lung disease.

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Administrative Assistants

Shengjie Feng

Michelle Kwong

Administrative Assistant, Biochemistry and Biophysics

Michelle has joined the Cheng lab as an administrative assistant for Yifan beginning April 2022. Her main role is assisting Yifan and John with administrative duties and assisting the lab with whatever help they may need. Michelle also assists four other department faculty.

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Lab Assistants

Josie Lee

Josefina Lee

Lab Assistant 1

 

Lab Alumni

Students

David Booth, Ph.D.

Graduate Student, Biophysics

David Booth is now an assistant professor at UCSF.

 

Yuan Gao

Yuan Gao, Ph.D.

Graduate Student, Biophysics, joint with Julias Lab

 

 

Yuan Gao is now a postdoctoral scholar at Harvard Medical School. 

 

Eugene Palovcak

Eugene Palovcak, Ph.D.

Graduate Student, Biophysics 

 

 

Eugene Palovcak is now an AI scientist at Invitae. 

 

Evan Green

Evan Green, Ph.D.

Graduate Student, Biophysics

 

 

Evan Green is now a postdoctoral scholar at Genentech. 

 

Daniel Asarnow

Daniel Asarnow, Ph.D.

Graduate Student, Postdoc, Biophysics

 

 

Daniel Asarnow is now a postdoctoral scholar at the University of Washington. 

 

Bryan Faust

Bryan Faust, Ph.D.

Graduate Student, Biophysics

 

 

Bryan Faust is now a deal analyst (Bio + Health division) at Andreessen Horowitz. 

Postdocs

Homin Kim, Ph.D. 

Postdoc, Biochemistry and Biophysics

Homin Kim is now associate professor at Korea Advanced Institute of Science and Technology (KAIST) and Chief Investigator, Institute for Basic Science, Korea.

 

Xueming Li, Ph.D. 

Postdoc, Biochemistry and Biophysics

Xueming Li is now an associate professor at Tsinghua University. 

 

Maofu Liao, Ph.D.

Associate Specialist, Biochemistry and Biophysics

Maofu Liao is now an associate professor at Harvard Medical School. 

 

Yadong Yu, Ph.D.

Associate Specialist, Biochemistry and Biophysics

Yadong Yu is now a senior scientist at Truebinding.

 

David Bulkley

David Bulkley, Ph.D. 

Postdoc, Biochemistry and Biophysics

 

 

David Bulkley is now the EM facility manager at UCSF. 

 

JP Armache

Jean-Paul Armache, Ph.D.

Postdoc, Biochemistry and Biophysics

 

 

Jean-Paul is now an assistant professor at Pennsylvania State University. 

 

Shangyu Dang

Shangyu Dang, Ph.D.

Postdoc, Biochemistry and Biophysics

 

 

Shangyu Dang is now an assistant professor at the Hong Kong University of Science and Technology. 

 
Shane Gonen, Ph.D.

Postdoc, Biochemistry and Biophysics

Shane Gonen is now an assistant professor at UC Irvine. 

 

Henriette Autzen

Henriette Autzen, Ph.D.

Postdoc, Biochemistry and Biophysics

 

 

Henriette Autzen is now an associate professor at the University of Copenhagen. 

 

Melody Campbell

Melody Campbell, Ph.D.

Postdoc, Biochemistry and Biophysics

 

 

Melody Campbell is now an assistant professor at the Fred Hutchinson Cancer Center. 

 

Caleigh Azumaya

Caleigh Azumaya, Ph.D.

Postdoc, Biochemistry and Biophysics

 

Caleigh Azumaya is now the EM facility manager at the Fred Hutchinson Cancer Center. 

 

Caleigh Azumaya

Jianhua Zhao, Ph.D.

Postdoc, Biochemistry and Biophysics 

 

Jianhua Zhao is now an assistant professor at the Sanford Burnham Prebys Medical Discovery Institute.

 

Kaihua Zhang

Kaihua Zhang, Ph.D.

Postdoc, Biochemistry and Biophysics

 

Kaihua Zhang is now a principal investigator at the Shanghai Medical College, Fudan University.

 

Junrui Li

Junrui Li, Ph.D.

Postdoc, Biochemistry and Biophysics 

 

Junrui Li is now a staff scientist at the Shanghai Institute of Materia Medica, Chinese Academy of Sciences.

 

 

 

Junrui Li

Cristina Puchades, Ph.D.

Postdoc, Biochemistry and Biophysics 

 

Cristina Puchades is now a Flagship Fellow at Flagship Pioneering.

 

 

Research Assistants

Yifei

Yifei Chen

Research Assistant, Biochemistry and Biophysics

 

Yifei Chen is now a graduate student in the Biophysics Program at UCS.

 

 

Technicians

Anglea Li

Junior Specialist, Biochemistry and Biophysics

Victor Rodriguez

Lab Technician, Biochemistry and Biophysics

Maggie Yang, Ph.D.

Assistant Specialist, Biochemistry and Biophysics

 

Staff Scientists

Augustin Avala-Sakar, Ph.D.

Specialist, Biochemistry and Biophysics

Agustin Avala-Sakar is now a scientist at Gatan Inc.  

 

Shenping Wu, Ph.D.

Staff Scientist, Biochemistry and Biophysics

 

Shenping Wu is now the EM facility manager at Yale University. 

 

Zanlin Yu, Ph.D.

Associate Specialist, Biochemisty and Biophysics

 

Zanlin Yu is now a cryo-EM core staff scientist and technical director at the National Institute of Neurological Disorders and Stroke (NIH/NINDS).

Affiliated Members

Arthur

Arthur Melo, Ph.D.

Postdoc, Biochemistry and Biophysics

 

Arthur Melo is now a CryoEM Specialist at UCSF.