2020

Schoof M*, Faust B*, Saunders RA*, Sangwan S*, Rezelj V*, Hoppe N, Boone M, Billesbølle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Deshpande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, García-Sastre A, Ott M, Vignuzzi M; QCRG Structural Biology Consortium, Walter P, Manglik A. An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike. Science. 2020 Nov 5:eabe3255. doi: 10.1126/science.abe3255. Epub ahead of print. PMID: 33154106.

Zhang Y, Lu WJ, Bulkley DP, Liang J, Ralko A, Han S, Roberts KJ, Li A, Cho W, Cheng Y, Manglik A, Beachy PA. Hedgehog pathway activation through nanobody-mediated conformational blockade of the Patched sterol conduit. Proc Natl Acad Sci U S A. 2020 Nov 2:202011560. doi: 10.1073/pnas.2011560117. Epub ahead of print. PMID: 33139559.

Aksel T, Yu Z, Cheng Y, Douglas SM. Molecular goniometers for single-particle cryo-electron microscopy of DNA-binding proteins. Nat Biotechnol. 2020 Oct 19. doi: 10.1038/s41587-020-0716-8. Epub ahead of print. PMID: 33077960.

Gordon DE*, Hiatt J*, Bouhaddou M*, Rezelj VV*, Ulferts S*, Braberg H*, Jureka AS*, Obernier K*, Guo JZ*, Batra J*, Kaake RM*, Weckstein AR*, Owens TW*, Gupta M*, Pourmal S*, Titus EW*, Cakir M*, Soucheray M, McGregor M, Cakir Z, Jang G, O'Meara MJ, Tummino TA, Zhang Z, Foussard H, Rojc A, Zhou Y, Kuchenov D, Hüttenhain R, Xu J, Eckhardt M, Swaney DL, Fabius JM, Ummadi M, Tutuncuoglu B, Rathore U, Modak M, Haas P, Haas KM, Naing ZZC, Pulido EH, Shi Y, Barrio-Hernandez I, Memon D, Petsalaki E, Dunham A, Marrero MC, Burke D, Koh C, Vallet T, Silvas JA, Azumaya CM, Billesbølle C, Brilot AF, Campbell MG, Diallo A, Dickinson MS, Diwanji D, Herrera N, Hoppe N, Kratochvil HT, Liu Y, Merz GE, Moritz M, Nguyen HC, Nowotny C, Puchades C, Rizo AN, Schulze-Gahmen U, Smith AM, Sun M, Young ID, Zhao J, Asarnow D, Biel J, Bowen A, Braxton JR, Chen J, Chio CM, Chio US, Deshpande I, Doan L, Faust B, Flores S, Jin M, Kim K, Lam VL, Li F, Li J, Li YL, Li Y, Liu X, Lo M, Lopez KE, Melo AA, Moss FR 3rd, Nguyen P, Paulino J, Pawar KI, Peters JK, Pospiech TH Jr, Safari M, Sangwan S, Schaefer K, Thomas PV, Thwin AC, Trenker R, Tse E, Tsui TKM, Wang F, Whitis N, Yu Z, Zhang K, Zhang Y, Zhou F, Saltzberg D; QCRG Structural Biology Consortium, Hodder AJ, Shun-Shion AS, Williams DM, White KM, Rosales R, Kehrer T, Miorin L, Moreno E, Patel AH, Rihn S, Khalid MM, Vallejo-Gracia A, Fozouni P, Simoneau CR, Roth TL, Wu D, Karim MA, Ghoussaini M, Dunham I, Berardi F, Weigang S, Chazal M, Park J, Logue J, McGrath M, Weston S, Haupt R, Hastie CJ, Elliott M, Brown F, Burness KA, Reid E, Dorward M, Johnson C, Wilkinson SG, Geyer A, Giesel DM, Baillie C, Raggett S, Leech H, Toth R, Goodman N, Keough KC, Lind AL; Zoonomia Consortium, Klesh RJ, Hemphill KR, Carlson-Stevermer J, Oki J, Holden K, Maures T, Pollard KS, Sali A, Agard DA, Cheng Y, Fraser JS, Frost A, Jura N, Kortemme T, Manglik A, Southworth DR, Stroud RM, Alessi DR, Davies P, Frieman MB, Ideker T, Abate C, Jouvenet N, Kochs G, Shoichet B, Ott M, Palmarini M, Shokat KM, García-Sastre A, Rassen JA, Grosse R, Rosenberg OS, Verba KA, Basler CF, Vignuzzi M, Peden AA, Beltrao P, Krogan NJ. Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Science. 2020 Oct 15:eabe9403. doi: 10.1126/science.abe9403. Epub ahead of print. PMID: 33060197.

Yu Z, Yu Y, Wang F, Myasnikov AG, Coffino P, Cheng Y. Allosteric coupling between α-rings of the 20S proteasome. Nat Commun. 2020 Sep 11;11(1):4580. doi: 10.1038/s41467-020-18415-7. PMID: 32917864; PMCID: PMC7486400.

Yu Y, Liu H, Yu Z, Witkowska HE, Cheng Y. Stoichiometry of Nucleotide Binding to Proteasome AAA+ ATPase Hexamer Established by Native Mass Spectrometry. Mol Cell Proteomics. 2020 Sep 3:mcp.RA120.002067. doi: 10.1074/mcp.RA120.002067. Epub ahead of print. PMID: 32883800.

Bai Y, Yu Z, Ackerman L, Zhang Y, Bonde J, Li W, Cheng Y, Habelitz S. Protein nanoribbons template enamel mineralization. Proc Natl Acad Sci U S A. 2020 Aug 11;117(32):19201-19208. doi: 10.1073/pnas.2007838117. Epub 2020 Jul 31. PMID: 32737162; PMCID: PMC7431033.

Billesbølle CB, Azumaya CM, Kretsch RC, Powers AS, Gonen S, Schneider S, Arvedson T, Dror RO, Cheng Y, Manglik A. Structure of hepcidin-bound ferroportin reveals iron homeostatic mechanisms. Nature. 2020 Aug 19;. doi: 10.1038/s41586-020-2668-z. [Epub ahead of print] PubMed PMID: 32814342; NIHMSID:NIHMS1612459.

Campbell MG, Cormier A, Ito S, Seed RI, Bondesson AJ, Lou J, Marks JD, Baron JL, Cheng Y, Nishimura SL. Cryo-EM Reveals Integrin-Mediated TGF-β Activation without Release from Latent TGF-β. Cell. 2020 Feb 6;180(3):490-501.e16. doi: 10.1016/j.cell.2019.12.030. Epub 2020 Jan 16. PubMed PMID: 31955848; PubMed Central PMCID: PMC7238552.

Wang F, Yu Z, Betegon M, Campbell MG, Aksel T, Zhao J, Li S, Douglas SM, Cheng Y, Agard DA. Amino and PEG-amino graphene oxide grids enrich and protect samples for high-resolution single particle cryo-electron microscopy. J Struct Biol. 2020 Feb 1;209(2):107437. doi: 10.1016/j.jsb.2019.107437. Epub 2019 Dec 19. PubMed PMID: 31866389; PubMed Central PMCID: PMC7272056.

2019

Morris KL, Jones JR, Halebian M, Wu S, Baker M, Armache JP, Avila Ibarra A, Sessions RB, Cameron AD, Cheng Y, Smith CJ. Cryo-EM of multiple cage architectures reveals a universal mode of clathrin self-assembly. Nat Struct Mol Biol. 2019 Oct;26(10):890-898. doi: 10.1038/s41594-019-0292-0. Epub 2019 Oct 3. PubMed PMID: 31582853; PubMed Central PMCID: PMC7100586.

Armache JP, Cheng Y. Single-particle cryo-EM: beyond the resolution. Natl Sci Rev. 2019 Oct;6(5):864-866. doi: 10.1093/nsr/nwz127. Epub 2019 Sep 2. PubMed PMID: 31867130; PubMed Central PMCID: PMC6911652.

Diver MM, Cheng Y, Julius D. Structural insights into TRPM8 inhibition and desensitization. Science. 2019 Sep 27;365(6460):1434-1440. doi: 10.1126/science.aax6672. Epub 2019 Sep 5. PubMed PMID: 31488702; PubMed Central PMCID: PMC7262954.

Feng S, Dang S, Han TW, Ye W, Jin P, Cheng T, Li J, Jan YN, Jan LY, Cheng Y. Cryo-EM Studies of TMEM16F Calcium-Activated Ion Channel Suggest Features Important for Lipid Scrambling. Cell Rep. 2019 Jul 30;28(5):1385. doi: 10.1016/j.celrep.2019.07.052. PubMed PMID: 31365878; PubMed Central PMCID: PMC6690723.

Dang S, van Goor MK, Asarnow D, Wang Y, Julius D, Cheng Y, van der Wijst J. Structural insight into TRPV5 channel function and modulation. Proc Natl Acad Sci U S A. 2019 Apr 30;116(18):8869-8878. doi: 10.1073/pnas.1820323116. Epub 2019 Apr 11. PubMed PMID: 30975749; PubMed Central PMCID: PMC6500171.

Stoddard CI, Feng S, Campbell MG, Liu W, Wang H, Zhong X, Bernatavichute Y, Cheng Y, Jacobsen SE, Narlikar GJ. A Nucleosome Bridging Mechanism for Activation of a Maintenance DNA Methyltransferase. Mol Cell. 2019 Jan 3;73(1):73-83.e6. doi: 10.1016/j.molcel.2018.10.006. Epub 2018 Nov 8. PubMed PMID: 30415948; PubMed Central PMCID: PMC6407616.

2018

Zhang Y, Bulkley DP, Xin Y, Roberts KJ, Asarnow DE, Sharma A, Myers BR, Cho W, Cheng Y, Beachy PA. Structural Basis for Cholesterol Transport-like Activity of the Hedgehog Receptor Patched. Cell. 2018 Nov 15;175(5):1352-1364.e14. doi: 10.1016/j.cell.2018.10.026. Epub 2018 Nov 8. PubMed PMID: 30415841; PubMed Central PMCID: PMC6326742.

Heymann JB, Marabini R, Kazemi M, Sorzano COS, Holmdahl M, Mendez JH, Stagg SM, Jonic S, Palovcak E, Armache JP, Zhao J, Cheng Y, Pintilie G, Chiu W, Patwardhan A, Carazo JM. The first single particle analysis Map Challenge: A summary of the assessments. J Struct Biol. 2018 Nov;204(2):291-300. doi: 10.1016/j.jsb.2018.08.010. Epub 2018 Aug 13. PubMed PMID: 30114512; PubMed Central PMCID: PMC6205511.

Takasaka N, Seed RI, Cormier A, Bondesson AJ, Lou J, Elattma A, Ito S, Yanagisawa H, Hashimoto M, Ma R, Levine MD, Publicover J, Potts R, Jespersen JM, Campbell MG, Conrad F, Marks JD, Cheng Y, Baron JL, Nishimura SL. Integrin αvβ8-expressing tumor cells evade host immunity by regulating TGF-β activation in immune cells. JCI Insight. 2018 Oct 18;3(20). doi: 10.1172/jci.insight.122591. PubMed PMID: 30333313; PubMed Central PMCID: PMC6237456.

Palovcak E, Wang F, Zheng SQ, Yu Z, Li S, Betegon M, Bulkley D, Agard DA, Cheng Y. A simple and robust procedure for preparing graphene-oxide cryo-EM grids. J Struct Biol. 2018 Oct;204(1):80-84. doi: 10.1016/j.jsb.2018.07.007. Epub 2018 Jul 11. PubMed PMID: 30017701; PubMed Central PMCID: PMC6119484.

Cheng Y. Membrane protein structural biology in the era of single particle cryo-EM. Curr Opin Struct Biol. 2018 Oct;52:58-63. doi: 10.1016/j.sbi.2018.08.008. Epub 2018 Sep 13. Review. PubMed PMID: 30219656; PubMed Central PMCID: PMC6296881.

Kintzer AF, Green EM, Dominik PK, Bridges M, Armache JP, Deneka D, Kim SS, Hubbell W, Kossiakoff AA, Cheng Y, Stroud RM. Structural basis for activation of voltage sensor domains in an ion channel TPC1. Proc Natl Acad Sci U S A. 2018 Sep 25;115(39):E9095-E9104. doi: 10.1073/pnas.1805651115. Epub 2018 Sep 6. PubMed PMID: 30190435; PubMed Central PMCID: PMC6166827.

Cheng Y. Single-particle cryo-EM-How did it get here and where will it go. Science. 2018 Aug 31;361(6405):876-880. doi: 10.1126/science.aat4346. Review. PubMed PMID: 30166484; PubMed Central PMCID: PMC6460916.

Cormier A, Campbell MG, Ito S, Wu S, Lou J, Marks J, Baron JL, Nishimura SL, Cheng Y. Cryo-EM structure of the αvβ8 integrin reveals a mechanism for stabilizing integrin extension. Nat Struct Mol Biol. 2018 Aug;25(8):698-704. doi: 10.1038/s41594-018-0093-x. Epub 2018 Jul 30. PubMed PMID: 30061598; PubMed Central PMCID: PMC6214843.

Nguyen NX, Armache JP, Lee C, Yang Y, Zeng W, Mootha VK, Cheng Y, Bai XC, Jiang Y. Cryo-EM structure of a fungal mitochondrial calcium uniporter. Nature. 2018 Jul;559(7715):570-574. doi: 10.1038/s41586-018-0333-6. Epub 2018 Jul 11. PubMed PMID: 29995855; PubMed Central PMCID: PMC6063787.

Autzen HE, Myasnikov AG, Campbell MG, Asarnow D, Julius D, Cheng Y. Structure of the human TRPM4 ion channel in a lipid nanodisc. Science. 2018 Jan 12;359(6372):228-232. doi: 10.1126/science.aar4510. Epub 2017 Dec 7. PubMed PMID: 29217581; PubMed Central PMCID: PMC5898196.

Binning JM, Smith AM, Hultquist JF, Craik CS, Caretta Cartozo N, Campbell MG, Burton L, La Greca F, McGregor MJ, Ta HM, Bartholomeeusen K, Peterlin BM, Krogan NJ, Sevillano N, Cheng Y, Gross JD. Fab-based inhibitors reveal ubiquitin independent functions for HIV Vif neutralization of APOBEC3 restriction factors. PLoS Pathog. 2018 Jan;14(1):e1006830. doi: 10.1371/journal.ppat.1006830. eCollection 2018 Jan. PubMed PMID: 29304101; PubMed Central PMCID: PMC5773222.

2017

Dang S, Feng S, Tien J, Peters CJ, Bulkley D, Lolicato M, Zhao J, Zuberbühler K, Ye W, Qi L, Chen T, Craik CS, Jan YN, Minor DL Jr, Cheng Y, Jan LY. Cryo-EM structures of the TMEM16A calcium-activated chloride channel. Nature. 2017 Dec 21;552(7685):426-429. doi: 10.1038/nature25024. Epub 2017 Dec 13. PubMed PMID: 29236684; PubMed Central PMCID: PMC5750132.

Cheng Y, Glaeser RM, Nogales E. How Cryo-EM Became so Hot. Cell. 2017 Nov 30;171(6):1229-1231. doi: 10.1016/j.cell.2017.11.016. PubMed PMID: 29195065; PubMed Central PMCID: PMC6186021.

Smith AAA, Autzen HE, Laursen T, Wu V, Yen M, Hall A, Hansen SD, Cheng Y, Xu T. Controlling Styrene Maleic Acid Lipid Particles through RAFT. Biomacromolecules. 2017 Nov 13;18(11):3706-3713. doi: 10.1021/acs.biomac.7b01136. Epub 2017 Oct 9. PubMed PMID: 28934548.

Jin P, Bulkley D, Guo Y, Zhang W, Guo Z, Huynh W, Wu S, Meltzer S, Cheng T, Jan LY, Jan YN, Cheng Y. Electron cryo-microscopy structure of the mechanotransduction channel NOMPC. Nature. 2017 Jul 6;547(7661):118-122. doi: 10.1038/nature22981. Epub 2017 Jun 26. PubMed PMID: 28658211; PubMed Central PMCID: PMC5669069.

Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ. Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones. Cell Rep. 2017 Jun 6;19(10):2033-2044. doi: 10.1016/j.celrep.2017.05.029. PubMed PMID: 28591576; PubMed Central PMCID: PMC5564220.

Zheng SQ, Palovcak E, Armache JP, Verba KA, Cheng Y, Agard DA. MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy. Nat Methods. 2017 Apr;14(4):331-332. doi: 10.1038/nmeth.4193. Epub 2017 Feb 27. PubMed PMID: 28250466; PubMed Central PMCID: PMC5494038.

2016

Wang RY, Song Y, Barad BA, Cheng Y, Fraser JS, DiMaio F. Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta. Elife. 2016 Sep 26;5. doi: 10.7554/eLife.17219. PubMed PMID: 27669148; PubMed Central PMCID: PMC5115868.

Gao Y, Cao E, Julius D, Cheng Y. TRPV1 structures in nanodiscs reveal mechanisms of ligand and lipid action. Nature. 2016 Jun 16;534(7607):347-51. doi: 10.1038/nature17964. Epub 2016 May 18. PubMed PMID: 27281200; PubMed Central PMCID: PMC4911334.

Frauenfeld J, Löving R, Armache JP, Sonnen AF, Guettou F, Moberg P, Zhu L, Jegerschöld C, Flayhan A, Briggs JA, Garoff H, Löw C, Cheng Y, Nordlund P. A saposin-lipoprotein nanoparticle system for membrane proteins. Nat Methods. 2016 Apr;13(4):345-51. doi: 10.1038/nmeth.3801. Epub 2016 Mar 7. PubMed PMID: 26950744; PubMed Central PMCID: PMC4894539.

2015

Cheng Y, Walz T. The Special Issue of Microscopy on single-particle cryo-electron microscopy. Microscopy (Oxf). 2016 Feb;65(1):1-2. doi: 10.1093/jmicro/dfv359. Epub 2015 Nov 18. PubMed PMID: 26586604.

Wu S, Armache JP, Cheng Y. Single-particle cryo-EM data acquisition by using direct electron detection camera. Microscopy (Oxf). 2016 Feb;65(1):35-41. doi: 10.1093/jmicro/dfv355. Epub 2015 Nov 6. Review. PubMed PMID: 26546989; PubMed Central PMCID: PMC4749049.

Chiu PL, Li X, Li Z, Beckett B, Brilot AF, Grigorieff N, Agard DA, Cheng Y, Walz T. Evaluation of super-resolution performance of the K2 electron-counting camera using 2D crystals of aquaporin-0. J Struct Biol. 2015 Nov;192(2):163-73. doi: 10.1016/j.jsb.2015.08.015. Epub 2015 Aug 28. PubMed PMID: 26318383; PubMed Central PMCID: PMC4633381.

Li X, Zheng S, Agard DA, Cheng Y. Asynchronous data acquisition and on-the-fly analysis of dose fractionated cryoEM images by UCSFImage. J Struct Biol. 2015 Nov;192(2):174-8. doi: 10.1016/j.jsb.2015.09.003. Epub 2015 Sep 11. PubMed PMID: 26370395; PubMed Central PMCID: PMC4633327.

Du J, Lü W, Wu S, Cheng Y, Gouaux E. Glycine receptor mechanism elucidated by electron cryo-microscopy. Nature. 2015 Oct 8;526(7572):224-9. doi: 10.1038/nature14853. Epub 2015 Sep 7. PubMed PMID: 26344198; PubMed Central PMCID: PMC4659708.

Barad BA, Echols N, Wang RY, Cheng Y, DiMaio F, Adams PD, Fraser JS. EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. Nat Methods. 2015 Oct;12(10):943-6. doi: 10.1038/nmeth.3541. Epub 2015 Aug 17. PubMed PMID: 26280328; PubMed Central PMCID: PMC4589481.

Goedert M, Cheng Y. Parkinson's disease: Crystals of a toxic core. Nature. 2015 Sep 24;525(7570):458-9. doi: 10.1038/nature15630. Epub 2015 Sep 9. PubMed PMID: 26352470.

Cheng Y. Single-Particle Cryo-EM at Crystallographic Resolution. Cell. 2015 Apr 23;161(3):450-457. doi: 10.1016/j.cell.2015.03.049. Review. PubMed PMID: 25910205; PubMed Central PMCID: PMC4409662.

Paulsen CE, Armache JP, Gao Y, Cheng Y, Julius D. Structure of the TRPA1 ion channel suggests regulatory mechanisms. Nature. 2015 Apr 23;520(7548):511-7. doi: 10.1038/nature14367. Epub 2015 Apr 8. PubMed PMID: 25855297; PubMed Central PMCID: PMC4409540.

Cheng Y, Grigorieff N, Penczek PA, Walz T. A primer to single-particle cryo-electron microscopy. Cell. 2015 Apr 23;161(3):438-449. doi: 10.1016/j.cell.2015.03.050. Review. PubMed PMID: 25910204; PubMed Central PMCID: PMC4409659.

Rosenberg OS, Dovala D, Li X, Connolly L, Bendebury A, Finer-Moore J, Holton J, Cheng Y, Stroud RM, Cox JS. Substrates Control Multimerization and Activation of the Multi-Domain ATPase Motor of Type VII Secretion. Cell. 2015 Apr 23;161(3):501-512. doi: 10.1016/j.cell.2015.03.040. Epub 2015 Apr 9. PubMed PMID: 25865481; PubMed Central PMCID: PMC4409929.

Wang RY, Kudryashev M, Li X, Egelman EH, Basler M, Cheng Y, Baker D, DiMaio F. De novo protein structure determination from near-atomic-resolution cryo-EM maps. Nat Methods. 2015 Apr;12(4):335-8. doi: 10.1038/nmeth.3287. Epub 2015 Feb 23. PubMed PMID: 25707029; PubMed Central PMCID: PMC4435692.

DiMaio F, Song Y, Li X, Brunner MJ, Xu C, Conticello V, Egelman E, Marlovits T, Cheng Y, Baker D. Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement. Nat Methods. 2015 Apr;12(4):361-365. doi: 10.1038/nmeth.3286. Epub 2015 Feb 23. PubMed PMID: 25707030; PubMed Central PMCID: PMC4382417.

Abrishami V, Vargas J, Li X, Cheng Y, Marabini R, Sorzano CÓ, Carazo JM. Alignment of direct detection device micrographs using a robust Optical Flow approach. J Struct Biol. 2015 Mar;189(3):163-76. doi: 10.1016/j.jsb.2015.02.001. Epub 2015 Feb 12. PubMed PMID: 25681631.

Zhao M, Wu S, Zhou Q, Vivona S, Cipriano DJ, Cheng Y, Brunger AT. Mechanistic insights into the recycling machine of the SNARE complex. Nature. 2015 Feb 5;518(7537):61-7. doi: 10.1038/nature14148. Epub 2015 Jan 12. PubMed PMID: 25581794; PubMed Central PMCID: PMC4320033.

Kim J, Wu S, Tomasiak TM, Mergel C, Winter MB, Stiller SB, Robles-Colmanares Y, Stroud RM, Tampé R, Craik CS, Cheng Y. Subnanometre-resolution electron cryomicroscopy structure of a heterodimeric ABC exporter. Nature. 2015 Jan 15;517(7534):396-400. doi: 10.1038/nature13872. Epub 2014 Nov 2. PubMed PMID: 25363761; PubMed Central PMCID: PMC4372080.

Shen PS, Park J, Qin Y, Li X, Parsawar K, Larson MH, Cox J, Cheng Y, Lambowitz AM, Weissman JS, Brandman O, Frost A. Protein synthesis. Rqc2p and 60S ribosomal subunits mediate mRNA-independent elongation of nascent chains. Science. 2015 Jan 2;347(6217):75-8. doi: 10.1126/science.1259724. PubMed PMID: 25554787; PubMed Central PMCID: PMC4451101.

2104

Booth DS, Cheng Y, Frankel AD. The export receptor Crm1 forms a dimer to promote nuclear export of HIV RNA. Elife. 2014 Dec 8;3:e04121. doi: 10.7554/eLife.04121. PubMed PMID: 25486595; PubMed Central PMCID: PMC4360530.

Bhabha G, Cheng HC, Zhang N, Moeller A, Liao M, Speir JA, Cheng Y, Vale RD. Allosteric communication in the dynein motor domain. Cell. 2014 Nov 6;159(4):857-68. doi: 10.1016/j.cell.2014.10.018. PubMed PMID: 25417161; PubMed Central PMCID: PMC4269335.

Liao M, Cao E, Julius D, Cheng Y. Single particle electron cryo-microscopy of a mammalian ion channel. Curr Opin Struct Biol. 2014 Aug;27:1-7. doi: 10.1016/j.sbi.2014.02.005. Epub 2014 Mar 25. Review. PubMed PMID: 24681231; PubMed Central PMCID: PMC4176607.

Wang Y, Schnitzbauer J, Hu Z, Li X, Cheng Y, Huang ZL, Huang B. Localization events-based sample drift correction for localization microscopy with redundant cross-correlation algorithm. Opt Express. 2014 Jun 30;22(13):15982-91. doi: 10.1364/OE.22.015982. PubMed PMID: 24977854; PubMed Central PMCID: PMC4162368.

Minagawa S, Lou J, Seed RI, Cormier A, Wu S, Cheng Y, Murray L, Tsui P, Connor J, Herbst R, Govaerts C, Barker T, Cambier S, Yanagisawa H, Goodsell A, Hashimoto M, Brand OJ, Cheng R, Ma R, McKnelly KJ, Wen W, Hill A, Jablons D, Wolters P, Kitamura H, Araya J, Barczak AJ, Erle DJ, Reichardt LF, Marks JD, Baron JL, Nishimura SL. Selective targeting of TGF-β activation to treat fibroinflammatory airway disease. Sci Transl Med. 2014 Jun 18;6(241):241ra79. doi: 10.1126/scitranslmed.3008074. PubMed PMID: 24944194; PubMed Central PMCID: PMC4341974.

Penczek PA, Fang J, Li X, Cheng Y, Loerke J, Spahn CM. CTER-rapid estimation of CTF parameters with error assessment. Ultramicroscopy. 2014 May;140:9-19. doi: 10.1016/j.ultramic.2014.01.009. Epub 2014 Feb 7. PubMed PMID: 24562077; PubMed Central PMCID: PMC4016771.

Lu J, Yu Y, Zhu I, Cheng Y, Sun PD. Structural mechanism of serum amyloid A-mediated inflammatory amyloidosis. Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5189-94. doi: 10.1073/pnas.1322357111. Epub 2014 Mar 24. PubMed PMID: 24706838; PubMed Central PMCID: PMC3986191.

2013

Cao E, Liao M, Cheng Y, Julius D. TRPV1 structures in distinct conformations reveal activation mechanisms. Nature. 2013 Dec 5;504(7478):113-8. doi: 10.1038/nature12823. PubMed PMID: 24305161; PubMed Central PMCID: PMC4023639.

Liao M, Cao E, Julius D, Cheng Y. Structure of the TRPV1 ion channel determined by electron cryo-microscopy. Nature. 2013 Dec 5;504(7478):107-12. doi: 10.1038/nature12822. PubMed PMID: 24305160; PubMed Central PMCID: PMC4078027.

Asensio CS, Sirkis DW, Maas JW Jr, Egami K, To TL, Brodsky FM, Shu X, Cheng Y, Edwards RH. Self-assembly of VPS41 promotes sorting required for biogenesis of the regulated secretory pathway. Dev Cell. 2013 Nov 25;27(4):425-37. doi: 10.1016/j.devcel.2013.10.007. Epub 2013 Nov 7. PubMed PMID: 24210660; PubMed Central PMCID: PMC3974617.

Li X, Zheng SQ, Egami K, Agard DA, Cheng Y. Influence of electron dose rate on electron counting images recorded with the K2 camera. J Struct Biol. 2013 Nov;184(2):251-60. doi: 10.1016/j.jsb.2013.08.005. Epub 2013 Aug 20. PubMed PMID: 23968652; PubMed Central PMCID: PMC3854003.

Li X, Mooney P, Zheng S, Booth CR, Braunfeld MB, Gubbens S, Agard DA, Cheng Y. Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM. Nat Methods. 2013 Jun;10(6):584-90. doi: 10.1038/nmeth.2472. Epub 2013 May 5. PubMed PMID: 23644547; PubMed Central PMCID: PMC3684049.

Park S, Li X, Kim HM, Singh CR, Tian G, Hoyt MA, Lovell S, Battaile KP, Zolkiewski M, Coffino P, Roelofs J, Cheng Y, Finley D. Reconfiguration of the proteasome during chaperone-mediated assembly. Nature. 2013 May 23;497(7450):512-6. doi: 10.1038/nature12123. Epub 2013 May 5. PubMed PMID: 23644457; PubMed Central PMCID: PMC3687086.

Qian MX, Pang Y, Liu CH, Haratake K, Du BY, Ji DY, Wang GF, Zhu QQ, Song W, Yu Y, Zhang XX, Huang HT, Miao S, Chen LB, Zhang ZH, Liang YN, Liu S, Cha H, Yang D, Zhai Y, Komatsu T, Tsuruta F, Li H, Cao C, Li W, Li GH, Cheng Y, Chiba T, Wang L, Goldberg AL, Shen Y, Qiu XB. Acetylation-mediated proteasomal degradation of core histones during DNA repair and spermatogenesis. Cell. 2013 May 23;153(5):1012-24. doi: 10.1016/j.cell.2013.04.032. PubMed PMID: 23706739; PubMed Central PMCID: PMC3983474.

Canzio D, Liao M, Naber N, Pate E, Larson A, Wu S, Marina DB, Garcia JF, Madhani HD, Cooke R, Schuck P, Cheng Y, Narlikar GJ. A conformational switch in HP1 releases auto-inhibition to drive heterochromatin assembly. Nature. 2013 Apr 18;496(7445):377-81. doi: 10.1038/nature12032. Epub 2013 Mar 13. PubMed PMID: 23485968; PubMed Central PMCID: PMC3907283.

Avila-Sakar A, Li X, Zheng SQ, Cheng Y. Recording high-resolution images of two-dimensional crystals of membrane proteins. Methods Mol Biol. 2013;955:129-52. doi: 10.1007/978-1-62703-176-9_8. PubMed PMID: 23132059.

2012

Schneidman-Duhovny D, Rossi A, Avila-Sakar A, Kim SJ, Velázquez-Muriel J, Strop P, Liang H, Krukenberg KA, Liao M, Kim HM, Sobhanifar S, Dötsch V, Rajpal A, Pons J, Agard DA, Cheng Y, Sali A. A method for integrative structure determination of protein-protein complexes. Bioinformatics. 2012 Dec 15;28(24):3282-9. doi: 10.1093/bioinformatics/bts628. Epub 2012 Oct 23. PubMed PMID: 23093611; PubMed Central PMCID: PMC3519461.

Martinez-Avila O, Wu S, Kim SJ, Cheng Y, Khan F, Samudrala R, Sali A, Horst JA, Habelitz S. Self-assembly of filamentous amelogenin requires calcium and phosphate: from dimers via nanoribbons to fibrils. Biomacromolecules. 2012 Nov 12;13(11):3494-502. doi: 10.1021/bm300942c. Epub 2012 Sep 28. PubMed PMID: 22974364; PubMed Central PMCID: PMC3496023.

Wu S, Avila-Sakar A, Kim J, Booth DS, Greenberg CH, Rossi A, Liao M, Li X, Alian A, Griner SL, Juge N, Yu Y, Mergel CM, Chaparro-Riggers J, Strop P, Tampé R, Edwards RH, Stroud RM, Craik CS, Cheng Y. Fabs enable single particle cryoEM studies of small proteins. Structure. 2012 Apr 4;20(4):582-92. doi: 10.1016/j.str.2012.02.017. Epub 2012 Apr 3. PubMed PMID: 22483106; PubMed Central PMCID: PMC3322386.

2011

Booth DS, Avila-Sakar A, Cheng Y. Visualizing proteins and macromolecular complexes by negative stain EM: from grid preparation to image acquisition. J Vis Exp. 2011 Dec 22;(58). doi: 10.3791/3227. PubMed PMID: 22215030; PubMed Central PMCID: PMC3369646.

Martinez-Avila OM, Wu S, Cheng Y, Lee R, Khan F, Habelitz S. Self-assembly of amelogenin proteins at the water-oil interface. Eur J Oral Sci. 2011 Dec;119 Suppl 1:75-82. doi: 10.1111/j.1600-0722.2011.00907.x. PubMed PMID: 22243231; PubMed Central PMCID: PMC6339812.

Zheng SQ, Branlund E, Kesthelyi B, Braunfeld MB, Cheng Y, Sedat JW, Agard DA. A distributed multi-GPU system for high speed electron microscopic tomographic reconstruction. Ultramicroscopy. 2011 Jul;111(8):1137-43. doi: 10.1016/j.ultramic.2011.03.015. Epub 2011 Apr 1. PubMed PMID: 21741915; PubMed Central PMCID: PMC3190582.

Nakamura K, Nemani VM, Azarbal F, Skibinski G, Levy JM, Egami K, Munishkina L, Zhang J, Gardner B, Wakabayashi J, Sesaki H, Cheng Y, Finkbeiner S, Nussbaum RL, Masliah E, Edwards RH. Direct membrane association drives mitochondrial fission by the Parkinson disease-associated protein alpha-synuclein. J Biol Chem. 2011 Jun 10;286(23):20710-26. doi: 10.1074/jbc.M110.213538. Epub 2011 Apr 13. PubMed PMID: 21489994; PubMed Central PMCID: PMC3121472.

He X, Wu S, Martinez-Avila O, Cheng Y, Habelitz S. Self-aligning amelogenin nanoribbons in oil-water system. J Struct Biol. 2011 Apr;174(1):203-12. doi: 10.1016/j.jsb.2010.11.027. Epub 2010 Dec 4. PubMed PMID: 21134461; PubMed Central PMCID: PMC3204882.

Kim HM, Yu Y, Cheng Y. Structure characterization of the 26S proteasome. Biochim Biophys Acta. 2011 Feb;1809(2):67-79. doi: 10.1016/j.bbagrm.2010.08.008. Epub 2010 Aug 26. Review. PubMed PMID: 20800708; PubMed Central PMCID: PMC3010250.

2010

Li X, Grigorieff N, Cheng Y. GPU-enabled FREALIGN: accelerating single particle 3D reconstruction and refinement in Fourier space on graphics processors. J Struct Biol. 2010 Dec;172(3):407-12. doi: 10.1016/j.jsb.2010.06.010. Epub 2010 Jun 15. PubMed PMID: 20558298; PubMed Central PMCID: PMC2964447.

Daugherty MD, Booth DS, Jayaraman B, Cheng Y, Frankel AD. HIV Rev response element (RRE) directs assembly of the Rev homooligomer into discrete asymmetric complexes. Proc Natl Acad Sci U S A. 2010 Jul 13;107(28):12481-6. doi: 10.1073/pnas.1007022107. Epub 2010 Jun 28. PubMed PMID: 20616058; PubMed Central PMCID: PMC2906596.

Yu Y, Smith DM, Kim HM, Rodriguez V, Goldberg AL, Cheng Y. Interactions of PAN's C-termini with archaeal 20S proteasome and implications for the eukaryotic proteasome-ATPase interactions. EMBO J. 2010 Feb 3;29(3):692-702. doi: 10.1038/emboj.2009.382. Epub 2009 Dec 17. PubMed PMID: 20019667; PubMed Central PMCID: PMC2830694.

Li Z, Hite RK, Cheng Y, Walz T. Evaluation of imaging plates as recording medium for images of negatively stained single particles and electron diffraction patterns of two-dimensional crystals. J Electron Microsc (Tokyo). 2010;59(1):53-63. doi: 10.1093/jmicro/dfp036. Epub 2009 Jul 30. PubMed PMID: 19643814; PubMed Central PMCID: PMC3156676.

Hite RK, Schenk AD, Li Z, Cheng Y, Walz T. Collecting electron crystallographic data of two-dimensional protein crystals. Methods Enzymol. 2010;481:251-82. doi: 10.1016/S0076-6879(10)81011-0. PubMed PMID: 20887861.

Lenassi M, Cagney G, Liao M, Vaupotic T, Bartholomeeusen K, Cheng Y, Krogan NJ, Plemenitas A, Peterlin BM. HIV Nef is secreted in exosomes and triggers apoptosis in bystander CD4+ T cells. Traffic. 2010 Jan;11(1):110-22. doi: 10.1111/j.1600-0854.2009.01006.x. PubMed PMID: 19912576; PubMed Central PMCID: PMC2796297.

2009

Racki LR, Yang JG, Naber N, Partensky PD, Acevedo A, Purcell TJ, Cooke R, Cheng Y, Narlikar GJ. The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes. Nature. 2009 Dec 24;462(7276):1016-21. doi: 10.1038/nature08621. PubMed PMID: 20033039; PubMed Central PMCID: PMC2869534.

Kim HZ, Jung K, Kim HM, Cheng Y, Koh GY. A designed angiopoietin-2 variant, pentameric COMP-Ang2, strongly activates Tie2 receptor and stimulates angiogenesis. Biochim Biophys Acta. 2009 May;1793(5):772-80. doi: 10.1016/j.bbamcr.2009.01.018. Epub 2009 Feb 10. PubMed PMID: 19339208.

Cheng Y. Toward an atomic model of the 26S proteasome. Curr Opin Struct Biol. 2009 Apr;19(2):203-8. doi: 10.1016/j.sbi.2009.02.004. Epub 2009 Mar 14. Review. PubMed PMID: 19286367; PubMed Central PMCID: PMC2743420.

Cheng Y, Walz T. The advent of near-atomic resolution in single-particle electron microscopy. Annu Rev Biochem. 2009;78:723-42. doi: 10.1146/annurev.biochem.78.070507.140543. Review. PubMed PMID: 19489732; NIHMSID:NIHMS359721.

2008

Rabl J, Smith DM, Yu Y, Chang SC, Goldberg AL, Cheng Y. Mechanism of gate opening in the 20S proteasome by the proteasomal ATPases. Mol Cell. 2008 May 9;30(3):360-8. doi: 10.1016/j.molcel.2008.03.004. PubMed PMID: 18471981; PubMed Central PMCID: PMC4141531.

Ballister ER, Lai AH, Zuckermann RN, Cheng Y, Mougous JD. In vitro self-assembly of tailorable nanotubes from a simple protein building block. Proc Natl Acad Sci U S A. 2008 Mar 11;105(10):3733-8. doi: 10.1073/pnas.0712247105. Epub 2008 Feb 29. PubMed PMID: 18310321; PubMed Central PMCID: PMC2268831.

Frey G, Peng H, Rits-Volloch S, Morelli M, Cheng Y, Chen B. A fusion-intermediate state of HIV-1 gp41 targeted by broadly neutralizing antibodies. Proc Natl Acad Sci U S A. 2008 Mar 11;105(10):3739-44. doi: 10.1073/pnas.0800255105. Epub 2008 Mar 5. PubMed PMID: 18322015; PubMed Central PMCID: PMC2268799.

Gonen T, Hite RK, Cheng Y, Petre BM, Kistler J, Walz T. Polymorphic assemblies and crystalline arrays of lens tetraspanin MP20. J Mol Biol. 2008 Feb 15;376(2):380-92. doi: 10.1016/j.jmb.2007.09.001. Epub 2007 Sep 8. PubMed PMID: 18166196.

2007

Ohi MD, Feoktistova A, Ren L, Yip C, Cheng Y, Chen JS, Yoon HJ, Wall JS, Huang Z, Penczek PA, Gould KL, Walz T. Structural organization of the anaphase-promoting complex bound to the mitotic activator Slp1. Mol Cell. 2007 Dec 14;28(5):871-85. doi: 10.1016/j.molcel.2007.10.003. PubMed PMID: 18082611; PubMed Central PMCID: PMC2197158.

Smith DM, Chang SC, Park S, Finley D, Cheng Y, Goldberg AL. Docking of the proteasomal ATPases' carboxyl termini in the 20S proteasome's alpha ring opens the gate for substrate entry. Mol Cell. 2007 Sep 7;27(5):731-44. doi: 10.1016/j.molcel.2007.06.033. PubMed PMID: 17803938; PubMed Central PMCID: PMC2083707.

Cheng Y, Boll W, Kirchhausen T, Harrison SC, Walz T. Cryo-electron tomography of clathrin-coated vesicles: structural implications for coat assembly. J Mol Biol. 2007 Jan 19;365(3):892-9. doi: 10.1016/j.jmb.2006.10.036. Epub 2006 Oct 14. PubMed PMID: 17095010; PubMed Central PMCID: PMC1839968.

Cheng Y, Walz T. Reconstructing the endocytotic machinery. Methods Cell Biol. 2007;79:463-87. doi: 10.1016/S0091-679X(06)79018-5. PubMed PMID: 17327169.

2006

Fotin A, Kirchhausen T, Grigorieff N, Harrison SC, Walz T, Cheng Y. Structure determination of clathrin coats to subnanometer resolution by single particle cryo-electron microscopy. J Struct Biol. 2006 Dec;156(3):453-60. doi: 10.1016/j.jsb.2006.07.001. Epub 2006 Jul 11. PubMed PMID: 16908193; PubMed Central PMCID: PMC2910098.

Nishida N, Xie C, Shimaoka M, Cheng Y, Walz T, Springer TA. Activation of leukocyte beta2 integrins by conversion from bent to extended conformations. Immunity. 2006 Oct;25(4):583-94. doi: 10.1016/j.immuni.2006.07.016. PubMed PMID: 17045822.

Liu J, Wu S, Reedy MC, Winkler H, Lucaveche C, Cheng Y, Reedy MK, Taylor KA. Electron tomography of swollen rigor fibers of insect flight muscle reveals a short and variably angled S2 domain. J Mol Biol. 2006 Sep 29;362(4):844-60. doi: 10.1016/j.jmb.2006.07.084. Epub 2006 Aug 3. PubMed PMID: 16949613.

Cheng Y, Wolf E, Larvie M, Zak O, Aisen P, Grigorieff N, Harrison SC, Walz T. Single particle reconstructions of the transferrin-transferrin receptor complex obtained with different specimen preparation techniques. J Mol Biol. 2006 Feb 3;355(5):1048-65. doi: 10.1016/j.jmb.2005.11.021. Epub 2005 Nov 28. PubMed PMID: 16343539.

Nakagawa T, Cheng Y, Sheng M, Walz T. Three-dimensional structure of an AMPA receptor without associated stargazin/TARP proteins. Biol Chem. 2006 Feb;387(2):179-87. doi: 10.1515/BC.2006.024. PubMed PMID: 16497150.

2000 - 2005

Smith DM, Kafri G, Cheng Y, Ng D, Walz T, Goldberg AL. ATP binding to PAN or the 26S ATPases causes association with the 20S proteasome, gate opening, and translocation of unfolded proteins. Mol Cell. 2005 Dec 9;20(5):687-98. doi: 10.1016/j.molcel.2005.10.019. PubMed PMID: 16337593.

Gonen T, Cheng Y, Sliz P, Hiroaki Y, Fujiyoshi Y, Harrison SC, Walz T. Lipid-protein interactions in double-layered two-dimensional AQP0 crystals. Nature. 2005 Dec 1;438(7068):633-8. doi: 10.1038/nature04321. PubMed PMID: 16319884; PubMed Central PMCID: PMC1350984.

Cheng Y, Zak O, Aisen P, Harrison SC, Walz T. Single particle reconstruction of the human apo-transferrin-transferrin receptor complex. J Struct Biol. 2005 Dec;152(3):204-10. doi: 10.1016/j.jsb.2005.10.006. Epub 2005 Nov 28. PubMed PMID: 16343946.

Nakagawa T, Cheng Y, Ramm E, Sheng M, Walz T. Structure and different conformational states of native AMPA receptor complexes. Nature. 2005 Feb 3;433(7025):545-9. doi: 10.1038/nature03328. PubMed PMID: 15690046.

Fotin A, Cheng Y, Sliz P, Grigorieff N, Harrison SC, Kirchhausen T, Walz T. Molecular model for a complete clathrin lattice from electron cryomicroscopy. Nature. 2004 Dec 2;432(7017):573-9. doi: 10.1038/nature03079. Epub 2004 Oct 24. PubMed PMID: 15502812.

Fotin A, Cheng Y, Grigorieff N, Walz T, Harrison SC, Kirchhausen T. Structure of an auxilin-bound clathrin coat and its implications for the mechanism of uncoating. Nature. 2004 Dec 2;432(7017):649-53. doi: 10.1038/nature03078. Epub 2004 Oct 24. PubMed PMID: 15502813.

Gonen T, Cheng Y, Kistler J, Walz T. Aquaporin-0 membrane junctions form upon proteolytic cleavage. J Mol Biol. 2004 Sep 24;342(4):1337-45. doi: 10.1016/j.jmb.2004.07.076. PubMed PMID: 15351655.

Gonen T, Sliz P, Kistler J, Cheng Y, Walz T. Aquaporin-0 membrane junctions reveal the structure of a closed water pore. Nature. 2004 May 13;429(6988):193-7. doi: 10.1038/nature02503. PubMed PMID: 15141214.

Chen B, Cheng Y, Calder L, Harrison SC, Reinherz EL, Skehel JJ, Wiley DC. A chimeric protein of simian immunodeficiency virus envelope glycoprotein gp140 and Escherichia coli aspartate transcarbamoylase. J Virol. 2004 May;78(9):4508-16. doi: 10.1128/jvi.78.9.4508-4516.2004. PubMed PMID: 15078931; PubMed Central PMCID: PMC387710.

Ohi M, Li Y, Cheng Y, Walz T. Negative Staining and Image Classification - Powerful Tools in Modern Electron Microscopy. Biol Proced Online. 2004;6:23-34. doi: 10.1251/bpo70. Epub 2004 Mar 19. PubMed PMID: 15103397; PubMed Central PMCID: PMC389902.

Cheng Y, Zak O, Aisen P, Harrison SC, Walz T. Structure of the human transferrin receptor-transferrin complex. Cell. 2004 Feb 20;116(4):565-76. doi: 10.1016/s0092-8674(04)00130-8. PubMed PMID: 14980223.

Lederkremer GZ, Cheng Y, Petre BM, Vogan E, Springer S, Schekman R, Walz T, Kirchhausen T. Structure of the Sec23p/24p and Sec13p/31p complexes of COPII. Proc Natl Acad Sci U S A. 2001 Sep 11;98(19):10704-9. doi: 10.1073/pnas.191359398. Epub 2001 Sep 4. PubMed PMID: 11535824; PubMed Central PMCID: PMC58530.

Schmidt-Krey I, Mitsuoka K, Hirai T, Murata K, Cheng Y, Fujiyoshi Y, Morgenstern R, Hebert H. The three-dimensional map of microsomal glutathione transferase 1 at 6 A resolution. EMBO J. 2000 Dec 1;19(23):6311-6. doi: 10.1093/emboj/19.23.6311. PubMed PMID: 11101503; PubMed Central PMCID: PMC305867.

1997 - 1999

Schmidt-Krey I, Murata K, Hirai T, Mitsuoka K, Cheng Y, Morgenstern R, Fujiyoshi Y, Hebert H. The projection structure of the membrane protein microsomal glutathione transferase at 3 A resolution as determined from two-dimensional hexagonal crystals. J Mol Biol. 1999 Apr 30;288(2):243-53. doi: 10.1006/jmbi.1999.2683. PubMed PMID: 10329140.

Hiroaki Y, Mitsuoka K, Cheng Y, Hiroaki H, Fujiyoshi Y. Influence of various nucleotides on the in situ crystallization of Ca2+-ATPase. Biochim Biophys Acta. 1999 Jan 8;1415(2):361-8. doi: 10.1016/s0005-2736(98)00221-1. PubMed PMID: 9889398.

Cheng Y, Taylor KA. Characterization of the low magnification performance of a Philips CM300-FEG. Ultramicroscopy. 1998 Sep;74(4):209-20. doi: 10.1016/s0304-3991(98)00039-4. PubMed PMID: 9809458.

Taylor KA, Tang J, Cheng Y, Winkler H. The use of electron tomography for structural analysis of disordered protein arrays. J Struct Biol. 1997 Dec;120(3):372-86. doi: 10.1006/jsbi.1997.3932. PubMed PMID: 9441940.

1987 - 1998; materials science publications

Gjønnes K, Cheng Y, Berg BS, Hansen V. Correction for multiple scattering in integrated electron diffraction intensities - Application to determination of structure factors in the [001] projection of AlmFe. Acta crystallographica. Section A, Foundations of crystallography. 1998; A54:102-119.

Gjønnes J, Hansen V, Berg BS, Runde P, Cheng YF. Structure model for the phase AlmFe derived from electron diffraction intensities collected by combination of a precession technique and convergent-beam diffraction. Acta crystallographica. Section A, Foundations of crystallography. 1998; A54:306-319.

Cheng Y, Dettenwanger F, Mayer J, Schumann E, Rühler M. Identification of a new phase formed during the oxidation of γ-Titanium Aluminum. Scripta Materialia. 1996; 34:707-711.

Cheng Y, Nüchter W, Mayer J, Weickenmeier A, Gjønnes J. Low order structure factor amplitude and sign measurement of an unknown structure AlmFe by quantitative CBED. Acta crystallographica. Section A, Foundations of crystallography. 1996; A52:923-936.

Wang R, Gui J, Yao S, Cheng Y, Lu G. High-temperature X-ray diffraction study of the crystallization process in rapidly quenched Al6(Mn,Fe) alloy. Philosophical Magazine B. 1996; B54:L33-L37.

Cheng Y, Gjønnes J. Strip projection approach to the new model of AlMnSi icosahedral quasicrystal. Acta crystallographica. Section A, Foundations of crystallography. 1994; A50:455-461.

Cheng YF, Hansen V, Gjønnes J, Wallenberg LR. TEM study of the early stages of precipitation process in strip-cast Al3003 alloys. Journal of materials research. 1992; 7:3225-3241.

Cheng YF, Pan GZ, Li FH. Real space approach to the linear phason strain. physica status solidi (b). 1992; 170:47-55.

Cheng YF, Li FH. An attempt to describe one-dimensional incommensurate composite structure as phason-defected one dimensional quasiperiodic structure. Acta crystallographica. Section A, Foundations of crystallography. 1992; A48:796-804.

Cheng YF, Hui MJ, Li FH. A new commensurate and its related incommensurate phase in Al-Cu-Fe alloys. Philosophical Magazine Letter. 1991; 63:49-55.

Cheng YF, Hui MJ, Li FH. An intermediate State between the decagonal and monoclinic phase in an Al-Cu-Fe alloy. Philosophical Magazine Letter. 1991; 64:129-132.

Pan GZ, Cheng YF, Li FH. Six-dimensional crystal related to T2-phase Al6CuLi3 icosahedral quasicrystal and R-phase Al5CuLi3 body-centered-cubic crystal. Phys Rev B Condens Matter. 1990 Feb 15;41(6):3401-3405. doi: 10.1103/physrevb.41.3401. PubMed PMID: 9994133.

Li FH, Cheng YF. A simple approach to quasicrystal structure and defect formulation. Acta crystallographica. Section A, Foundations of crystallography. 1990; A46:142-149.

Cheng YF, Hui MJ, Chen XS, Li FH. Relationship between icosahedral phase and monoclinic phase in Al-Cu-Fe alloy. Philosophical Magazine Letter. 1990; 61:173-179.

Ren ZF, Cheng YF, Jiang YD, Guan WY. Single crystal growth and characterization in Ca-Doped Y-Ba-Cu-O system. Journal of Material Science Letter. 1990; 9:738-740.

Cheng Y, Hui M, Wu X, Yang D, Chen X. R-phase and icosahedral phase in Al-Cu-Fe alloys. Chinese Physics Letter. 1989; 5:529-532.

Li F, Pan G, Cheng Y. Transformation from icosahedral phase to body center cubic phase in cut description. Chinese Physics Letter. 1989; 5:464-468.

Cheng Y, Wang R. Dynamical theory of electron diffraction of quasicrystal. phyiscal status solidi (b). 1988; 152:33-37.

Zhao D, Wang R, Cheng Y, Wang Z. Calculation of diffraction patterns of icosahedral phase. Journal of Physics F: Metal Physics. 1988; 18:1893-1904.

Cheng Y, Wang R. Convergent beam electron diffraction determination of the extinction distance of the quasicrystalline icosahedral phase. Solid State Communications. 1988; 68:795-797.

Wang R, Cheng Y. Dynamical theory of electron diffraction and its application to the rocking curve simulation for quasicrystal. Materials Science Forum. 1987; 22-24:409-420.